STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_007443Nucleoporin_C domain-containing protein. (682 aa)    
Predicted Functional Partners:
CAOG_006913
Uncharacterized protein.
   
 0.982
CAOG_000543
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.972
CAOG_000672
Nucleoporin.
   
 0.959
CAOG_000632
Uncharacterized protein.
   
 0.957
CAOG_004158
Nucleoporin Seh1; Belongs to the WD repeat SEC13 family.
   
 0.953
CAOG_000587
Protein transporter SEC13; Belongs to the WD repeat SEC13 family.
    
 0.952
CAOG_006338
Uncharacterized protein.
   
 0.948
CAOG_003895
Nuclear pore protein.
   
 0.945
CAOG_006026
Uncharacterized protein.
   
 0.943
CAOG_001151
Uncharacterized protein.
   
 0.939
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.