STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_008090Probable ribosome biogenesis protein CAOG_008090; Probable pre-rRNA processing protein involved in ribosome biogenesis. (358 aa)    
Predicted Functional Partners:
CAOG_004467
BUD32 protein kinase.
 
      0.828
CAOG_002248
F-box domain-containing protein.
 
      0.773
CAOG_006784
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.717
CAOG_003618
Uncharacterized protein.
   
  
 0.642
CAOG_000476
Methyltransferase.
   
  
 0.580
CAOG_003005
Ribosome biogenesis protein Nob1; Belongs to the NOB1 family.
   
  
 0.549
CAOG_002524
C2f protein.
   
  
 0.516
CAOG_007407
tRNA dihydrouridine synthase Dus2.
   
  
 0.505
CAOG_003762
Uncharacterized protein.
   
  
 0.479
CAOG_005360
5-oxoprolinase.
 
      0.476
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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