STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000169CCHC-type domain-containing protein. (915 aa)    
Predicted Functional Partners:
CAOG_000360
SKIV2L2 protein.
   
 
 0.726
CAOG_009790
NTP_transf_2 domain-containing protein.
   
 
 0.620
CAOG_008933
Uncharacterized protein.
   
 
 0.620
CAOG_004605
RNA helicase.
   
 
 0.515
CAOG_004762
LisH domain-containing protein.
    
 
 0.472
CAOG_000522
HABP4_PAI-RBP1 domain-containing protein.
   
 
 0.463
CAOG_004270
Rbm13-prov protein.
   
   0.458
CAOG_000843
Importin N-terminal domain-containing protein.
   
 
 0.457
CAOG_002098
BXDC2 protein.
   
   0.454
CAOG_002269
Uncharacterized protein.
   
   0.453
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.