STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000327RNA-binding protein. (293 aa)    
Predicted Functional Partners:
CAOG_004447
Smad nuclear interacting protein 1.
   
 0.995
CAOG_000157
Uncharacterized protein.
   
 0.995
CAOG_007044
Pre-mRNA-splicing factor.
    
 
 0.983
CAOG_004211
Splicing factor 3b.
    
 
 0.983
CAOG_000996
Cell division cycle 5-like protein.
    
 
 0.980
CAOG_006903
Splicing factor 3B subunit 2.
    
 
 0.980
CAOG_006136
Splicing factor 3B subunit 3.
    
 
 0.979
CAOG_006059
Splicing factor 3B subunit 4.
    
 
 0.978
CAOG_009761
Uncharacterized protein.
    
 
 0.975
CAOG_003293
Nmp200-prov protein.
    
   0.973
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.