STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000997Seryl-tRNA synthetase. (615 aa)    
Predicted Functional Partners:
CAOG_005869
Uncharacterized protein.
     
 0.861
CAOG_008030
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.853
CAOG_003878
Tyrosine--tRNA ligase.
  
  
 0.774
CAOG_003658
Seryl-tRNA synthetase.
  
  
 
0.768
CAOG_010009
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.756
CAOG_010010
Prolyl-tRNA synthetase.
  
 
 0.756
CAOG_000734
Uncharacterized protein.
     
 0.754
CAOG_004167
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.733
CAOG_009259
Uncharacterized protein.
  
 
 0.716
CAOG_007570
Rars protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.712
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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