STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_004252DDHD domain containing 2. (793 aa)    
Predicted Functional Partners:
CAOG_007940
SEC31B protein.
    
 0.739
CAOG_007168
ANK_REP_REGION domain-containing protein.
    
 0.679
CAOG_000587
Protein transporter SEC13; Belongs to the WD repeat SEC13 family.
    
 0.669
CAOG_008493
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.660
CAOG_006689
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.660
CAOG_005907
Uncharacterized protein; Belongs to the synaptobrevin family.
     
 0.584
CAOG_005557
Protein transporter Sec24-like CEF.
   
 
 0.563
CAOG_000297
Uncharacterized protein.
     
 0.558
CAOG_005247
Protein transporter SEC24.
     
 0.558
CAOG_005271
GTPase; Belongs to the small GTPase superfamily. SAR1 family.
     
 0.550
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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