STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_006293Uncharacterized protein. (1592 aa)    
Predicted Functional Partners:
CAOG_004608
Uncharacterized protein.
   
 0.997
CAOG_002329
GTP-binding protein yptV3.
     
 0.791
CAOG_002352
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.704
CAOG_008429
Uncharacterized protein.
   
 
 0.643
CAOG_000787
Uncharacterized protein.
   
 
  0.623
CAOG_001507
Ras-like protein Rab-6A.
     
 0.616
CAOG_005057
Dynactin 4.
   
 
  0.602
CAOG_003506
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
   
 
  0.594
CAOG_001239
Thyroid hormone receptor interactor 12.
   
  
 0.552
CAOG_003481
Tbc1d20 protein.
      
 0.412
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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