STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_007105Pre-mRNA splicing factor prp8. (3934 aa)    
Predicted Functional Partners:
CAOG_009761
Uncharacterized protein.
   
 0.999
CAOG_005368
Elongation factor Tu GTP binding domain containing 2.
   
 0.998
CAOG_006377
Biotin/lipoate A/B protein ligase.
   
 0.998
CAOG_006373
Pre-mRNA splicing factor.
   
 0.998
CAOG_006426
DEAD box ATP-dependent RNA helicase.
   
 0.997
CAOG_007919
Sm domain-containing protein.
   
 0.993
CAOG_000994
Thioredoxin-like protein 4A.
    
 0.993
CAOG_008022
Small nuclear ribonucleoprotein Sm D3.
   
 0.992
CAOG_006830
Pre-mRNA processing factor PRP3.
   
 0.992
CAOG_006779
Small nuclear ribonucleoprotein G.
   
 0.992
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.