STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_007407tRNA dihydrouridine synthase Dus2. (719 aa)    
Predicted Functional Partners:
CAOG_010009
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.977
CAOG_010010
Prolyl-tRNA synthetase.
  
 
 0.977
CAOG_002098
BXDC2 protein.
   
    0.652
CAOG_008069
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.640
CAOG_000677
tRNA-pseudouridine synthase.
  
 
 0.563
CAOG_004399
tRNA(M1A58)-methyltransferase subunit TRM61.
   
  
 0.533
CAOG_006774
DEAD box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 
 0.525
CAOG_006980
Uncharacterized protein.
   
  
0.516
CAOG_008090
Probable ribosome biogenesis protein CAOG_008090; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.505
CAOG_002214
tRNA and rRNA cytosine-C5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.500
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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