STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_007843DEAH box polypeptide 34. (1452 aa)    
Predicted Functional Partners:
CAOG_003011
S4 RNA-binding domain-containing protein.
   
  0.863
CAOG_006972
Uncharacterized protein.
   
 0.858
CAOG_005638
Sas10 domain-containing protein.
   
 0.854
CAOG_004406
Pre-mRNA splicing factor prp17.
   
 0.848
CAOG_005929
WD-repeat protein 50.
   
 0.846
CAOG_006277
Uncharacterized protein.
   
  0.839
CAOG_008938
WD_REPEATS_REGION domain-containing protein.
   
  0.837
CAOG_004260
Step II splicing factor SLU7.
    
 0.835
CAOG_002506
U3 snoRNP-associated protein Utp7.
   
 0.831
CAOG_003104
DEAD box polypeptide 49; Belongs to the DEAD box helicase family.
   
 0.830
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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