STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQW49_21625Unannotated protein. (138 aa)    
Predicted Functional Partners:
CQW49_21630
Unannotated protein; Belongs to the 'phage' integrase family.
 
     0.823
CQW49_21620
Unannotated protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
    0.807
GCA_000178815_00184
Unannotated protein.
       0.689
vapC-4
Unannotated protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.562
CQW49_18245
Unannotated protein.
  
     0.407
CQW49_09345
Unannotated protein.
  
     0.401
Your Current Organism:
Methylosinus trichosporium
NCBI taxonomy Id: 595536
Other names: M. trichosporium OB3b, Methylosinus trichosporium OB3b, Methylosinus trichosporium str. OB3b, Methylosinus trichosporium strain OB3b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.