STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptBUnannotated protein. (314 aa)    
Predicted Functional Partners:
lptG
Unannotated protein.
 
 
 0.988
CQW49_15440
Unannotated protein.
   
 0.984
CQW49_23800
Unannotated protein.
   
  0.931
CQW49_05960
Unannotated protein.
   
  0.905
CQW49_12000
Unannotated protein.
  
  
 0.903
CQW49_23795
Unannotated protein.
   
  0.879
CQW49_00480
Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.815
lpxD
Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.765
lpxB
Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.754
CQW49_21055
Unannotated protein.
  
   
 0.750
Your Current Organism:
Methylosinus trichosporium
NCBI taxonomy Id: 595536
Other names: M. trichosporium OB3b, Methylosinus trichosporium OB3b, Methylosinus trichosporium str. OB3b, Methylosinus trichosporium strain OB3b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.