STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34411.1PFAM: protein of unknown function DUF886; KEGG: vap:Vapar_0163 protein of unknown function DUF886. (190 aa)    
Predicted Functional Partners:
ADU34414.1
KEGG: vap:Vapar_0166 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase.
 
    0.931
ADU34413.1
TIGRFAM: formiminoglutamate deiminase; KEGG: vap:Vapar_0165 N-formimino-L-glutamate deiminase; PFAM: amidohydrolase.
 
    0.927
hutI
TIGRFAM: imidazolonepropionase; KEGG: vap:Vapar_0164 imidazolonepropionase; PFAM: amidohydrolase.
 
   
 0.849
ADU34404.1
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: vap:Vapar_0157 transcriptional regulator, histidine utilization repressor, GntR family; SMART: regulatory protein GntR HTH.
 
  
 0.835
ADU34415.1
KEGG: nmu:Nmul_A1383 hypothetical protein.
       0.709
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.687
ADU34416.1
PFAM: homocysteine S-methyltransferase; KEGG: vap:Vapar_0167 homocysteine S-methyltransferase.
       0.541
ADU34417.1
KEGG: pol:Bpro_3374 hypothetical protein.
       0.515
hutH
TIGRFAM: histidine ammonia-lyase; KEGG: vap:Vapar_0158 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
  
 0.503
ADU34410.1
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nde:NIDE1834 transposase.
       0.419
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.