STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34559.1PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_0325 short-chain dehydrogenase/reductase SDR. (303 aa)    
Predicted Functional Partners:
ADU34560.1
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: vap:Vapar_0324 acyl-CoA dehydrogenase domain protein.
 
  0.839
ADU34561.1
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ctt:CtCNB1_1722 acyl-CoA dehydrogenase-like protein.
  
  0.697
ADU34557.1
KEGG: vap:Vapar_0327 methylcrotonoyl-CoA carboxylase; PFAM: carboxyl transferase.
  
 
 0.681
ADU34558.1
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: vap:Vapar_0326 carbamoyl-phosphate synthase L chain ATP-binding.
  
 
 0.673
ADU40164.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_5291 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.610
ADU37360.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_2914 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.484
ADU34556.1
PFAM: MHYT domain protein; KEGG: vap:Vapar_0328 putative integral membrane sensor protein.
       0.473
ADU38288.1
PFAM: sulfatase; KEGG: vap:Vapar_3577 sulfatase.
   
 
 0.434
ADU38686.1
Amino acid adenylation domain protein; KEGG: bsu:BSU31960 siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin synthetase; TIGRFAM: amino acid adenylation domain protein; thioester reductase domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Male sterility domain.
  
 
 0.425
ADU39859.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_5003 short-chain dehydrogenase/reductase SDR.
  
 
   0.424
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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