STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34589.1Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_0352 transcriptional regulator, LysR family. (298 aa)    
Predicted Functional Partners:
ADU34588.1
PFAM: thioesterase superfamily protein; KEGG: vap:Vapar_0351 thioesterase superfamily protein.
  
    0.546
ADU34590.1
KEGG: vap:Vapar_0353 gentisate 1,2-dioxygenase; TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2 conserved barrel domain protein.
       0.540
ADU34591.1
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: vap:Vapar_0354 fumarylacetoacetate (FAA) hydrolase.
       0.408
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.