STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34625.1KEGG: dac:Daci_4599 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (259 aa)    
Predicted Functional Partners:
ADU34626.1
PFAM: cobalt transport protein; KEGG: ctt:CtCNB1_2059 cobalt transport protein.
 
 0.999
ADU34627.1
PFAM: BioY protein; KEGG: ajs:Ajs_2319 BioY protein.
 
 
 0.997
ADU38030.1
KEGG: azl:AZL_008050 hypothetical protein.
 
 
 0.907
ADU34624.1
KEGG: cwo:Cwoe_0706 PEP phosphonomutase and related enzymes-like protein.
       0.709
ADU37562.1
Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
  
  
 0.672
ADU37989.1
ABC transporter related protein; KEGG: mdi:p1METDI0062 putative high-affinity branched-chain amino acid transporter, ATP-binding component of ABC transporter (LivF-like); PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.664
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.632
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
  
 0.565
ADU35673.1
KEGG: vap:Vapar_6088 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.537
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
 
    0.496
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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