STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34678.1Manually curated; TIGRFAM: TonB-dependent siderophore receptor; KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug. (730 aa)    
Predicted Functional Partners:
ADU34677.1
KEGG: vap:Vapar_0433 PepSY-associated TM helix domain protein.
 
  
 0.879
ADU35425.1
KEGG: vap:Vapar_1123 PepSY-associated TM helix domain protein.
 
  
 0.768
ADU38493.1
Manually curated; TIGRFAM: amino acid adenylation domain protein; KEGG: dac:Daci_4753 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase.
  
  
 0.674
ADU38686.1
Amino acid adenylation domain protein; KEGG: bsu:BSU31960 siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin synthetase; TIGRFAM: amino acid adenylation domain protein; thioester reductase domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Male sterility domain.
  
  
 0.674
ADU36267.1
2OG-Fe(II) oxygenase; KEGG: mms:mma_3620 PiuC iron-regulated protein; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit.
 
  
 0.656
ADU37535.1
KEGG: mms:mma_1215 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; Secretin/TonB short domain; TonB-dependent receptor.
  
  
 0.651
ADU37341.1
KEGG: aav:Aave_3918 PepSY-associated TM helix domain-containing protein.
 
  
 0.646
ADU34329.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1095 putative transmembrane sensor.
 
  
 0.618
ADU35050.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor.
 
  
 0.591
ADU37313.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor.
 
  
 0.567
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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