STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34699.1PFAM: Protein of unknown function DUF2214, membrane; KEGG: vap:Vapar_0458 putative transmembrane protein. (150 aa)    
Predicted Functional Partners:
ADU34698.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_0457 transcriptional regulator, LysR family.
       0.602
ADU37923.1
PFAM: protein of unknown function DUF883 ElaB; KEGG: vap:Vapar_2153 protein of unknown function DUF883 ElaB.
  
     0.555
ADU34696.1
PFAM: pyruvate carboxyltransferase; KEGG: vap:Vapar_0455 pyruvate carboxyltransferase.
       0.500
ADU34697.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vap:Vapar_0456 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.500
ADU35619.1
Procollagen-proline dioxygenase; PFAM: 2OG-Fe(II) oxygenase; KEGG: vap:Vapar_1302 procollagen-proline dioxygenase; SMART: Prolyl 4-hydroxylase alpha subunit.
 
     0.495
ADU37839.1
KEGG: vap:Vapar_2232 hypothetical protein.
  
     0.490
ADU38711.1
Procollagen-proline dioxygenase; PFAM: 2OG-Fe(II) oxygenase; KEGG: vap:Vapar_3584 procollagen-proline dioxygenase; SMART: Prolyl 4-hydroxylase alpha subunit.
  
     0.466
ADU38976.1
PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_6014 GCN5-related N-acetyltransferase.
  
     0.458
ADU39381.1
PFAM: CheW domain protein; KEGG: vap:Vapar_4624 CheW protein.
  
     0.440
ADU39153.1
KEGG: vap:Vapar_4340 hypothetical protein.
  
     0.421
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.