STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34811.1PFAM: Type IV / VI secretion system, DotU; KEGG: vap:Vapar_0554 hypothetical protein. (441 aa)    
Predicted Functional Partners:
ADU34810.1
KEGG: vap:Vapar_0553 hypothetical protein.
 
  
 0.914
ADU35760.1
PFAM: glycosyl transferase family 2; KEGG: avi:Avi_1678 hypothetical protein.
  
 
   0.776
ADU34485.1
PFAM: O-antigen polymerase; KEGG: vap:Vapar_0257 O-antigen polymerase.
 
     0.772
ADU35113.1
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: svi:Svir_11630 metalloendopeptidase-like membrane protein.
 
   
 0.772
ADU39251.1
KEGG: vap:Vapar_4461 hypothetical protein.
  
     0.770
ADU34423.1
KEGG: vap:Vapar_0172 hypothetical protein.
  
     0.769
ADU35795.1
KEGG: bvi:Bcep1808_3481 hypothetical protein.
  
     0.768
ADU39280.1
KEGG: bac:BamMC406_6472 hypothetical protein.
 
  
 0.768
ADU39591.1
KEGG: vap:Vapar_4778 hypothetical protein.
  
     0.767
ADU38558.1
KEGG: vei:Veis_4669 hypothetical protein.
  
     0.762
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.