STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34813.1PFAM: monooxygenase FAD-binding; KEGG: vap:Vapar_0556 FAD dependent oxidoreductase. (437 aa)    
Predicted Functional Partners:
ADU34815.1
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: vap:Vapar_0558 AIR synthase related protein.
 
   
 0.917
ADU34818.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vap:Vapar_0561 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.916
ADU34814.1
KEGG: vap:Vapar_0557 hypothetical protein.
 
     0.914
ADU34817.1
KEGG: vap:Vapar_0560 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.914
ADU34816.1
PFAM: GCN5-related N-acetyltransferase; KEGG: vap:Vapar_0559 GCN5-related N-acetyltransferase.
 
     0.913
ADU34819.1
KEGG: vap:Vapar_0562 hypothetical protein.
 
   
 0.910
ADU37570.1
KEGG: vap:Vapar_2541 nitrilase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.721
ADU34820.1
KEGG: vap:Vapar_0563 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.
 
     0.718
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.435
ADU39439.1
KEGG: vap:Vapar_4656 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein.
  
    0.406
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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