STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34913.1KEGG: rfr:Rfer_0874 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH. (234 aa)    
Predicted Functional Partners:
ADU34505.1
KEGG: vap:Vapar_0276 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
     0.729
ADU38403.1
KEGG: vap:Vapar_3666 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
     0.729
ADU36128.1
KEGG: vap:Vapar_1746 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
     0.726
ADU40097.1
KEGG: vap:Vapar_5216 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
     0.687
ADU38431.1
KEGG: vap:Vapar_3688 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
  
 0.632
ADU34918.1
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: rfr:Rfer_0869 hypothetical protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
 
     0.630
ADU36108.1
KEGG: vap:Vapar_1727 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
  
 0.576
ADU34915.1
PFAM: protein of unknown function DUF979; KEGG: rfr:Rfer_0872 hypothetical protein.
 
     0.561
ADU35028.1
KEGG: vap:Vapar_0787 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
  
 0.557
ADU34914.1
PFAM: protein of unknown function DUF969; KEGG: rfr:Rfer_0873 hypothetical protein.
 
     0.556
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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