STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35025.1KEGG: vap:Vapar_0784 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit. (465 aa)    
Predicted Functional Partners:
ADU35026.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vei:Veis_1539 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.934
ADU35027.1
KEGG: vap:Vapar_0786 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
 
  
 0.928
ADU36539.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_4881 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.826
ADU35024.1
KEGG: vap:Vapar_0783 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
    0.811
ADU34938.1
KEGG: vap:Vapar_5721 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
  
 0.805
ADU34923.1
KEGG: vap:Vapar_5723 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
  
 0.804
ADU34936.1
KEGG: vap:Vapar_5723 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
  
 0.804
ADU36105.1
KEGG: vap:Vapar_1724 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
 
  
 0.804
ADU36540.1
KEGG: pol:Bpro_0088 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
  
 0.804
ADU36622.1
PFAM: Extracellular solute-binding protein, family 7; KEGG: vap:Vapar_0786 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.804
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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