STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35103.1KEGG: aav:Aave_4594 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (419 aa)    
Predicted Functional Partners:
ADU35104.1
PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpe:RPE_1823 phage SPO1 DNA polymerase-related protein.
 
  
 0.963
ADU35105.1
KEGG: vap:Vapar_0846 ureidoglycolate hydrolase; PFAM: Ureidoglycolate hydrolase.
       0.752
ADU35102.1
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rso:RSc1043 hypothetical protein.
       0.536
ADU35101.1
PFAM: PEBP family protein; KEGG: reu:Reut_B3733 PBP family phospholipid-binding protein.
       0.486
ADU39654.1
KEGG: vap:Vapar_4860 putative mRNA 3-end processing factor.
 
     0.416
ADU39653.1
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: vap:Vapar_4859 ATP-dependent DNA ligase.
 
     0.403
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.