STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35107.1PFAM: Amidase; KEGG: vap:Vapar_0848 amidase; Belongs to the amidase family. (392 aa)    
Predicted Functional Partners:
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 
 0.931
ADU39502.1
PFAM: acylphosphatase; KEGG: vap:Vapar_4711 acylphosphatase.
 
  
  0.914
ADU34818.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vap:Vapar_0561 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
    
 0.904
ADU37570.1
KEGG: vap:Vapar_2541 nitrilase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
    
 0.904
ADU37991.1
PFAM: Aldehyde Dehydrogenase; KEGG: bpr:GBP346_A4247 phenylacetaldehyde dehydrogenase (PAD); Belongs to the aldehyde dehydrogenase family.
   
 0.904
ADU34324.1
KEGG: vap:Vapar_0089 benzoate-CoA ligase family; TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase.
   
 
  0.903
ADU36026.1
Nitrile hydratase; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.
    
 0.903
ADU35545.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
    
  0.902
ADU36025.1
TIGRFAM: nitrile hydratase, alpha subunit; KEGG: vap:Vapar_1665 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain.
    
  0.902
ADU39869.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_5012 putative phenylacetate-CoA ligase.
    
  0.902
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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