STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35123.1KEGG: vap:Vapar_0865 cysteine synthase; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Belongs to the cysteine synthase/cystathionine beta- synthase family. (306 aa)    
Predicted Functional Partners:
ADU38271.1
TIGRFAM: serine O-acetyltransferase; KEGG: vap:Vapar_3564 serine O-acetyltransferase.
 
 0.986
ADU36881.1
KEGG: vap:Vapar_1891 serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein.
 
 0.981
ADU37871.1
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: vap:Vapar_2203 cystathionine beta-lyase.
 
 0.965
ADU38775.1
KEGG: vei:Veis_4134 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
 
 0.965
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
 0.963
ADU36269.1
PFAM: flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mpt:Mpe_A3726 putative oxidoreductase.
  
 
 0.945
ADU36817.1
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: vap:Vapar_2408 sulfite reductase (ferredoxin).
  
 
 0.945
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 
 0.917
ADU34548.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_0312 aminotransferase class I and II.
    
 0.909
ADU38166.1
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: vap:Vapar_3479 pyridoxal-5'-phosphate-dependent protein beta subunit.
  
  
 
0.908
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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