STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35171.1Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_5474 transcriptional regulator, LysR family. (322 aa)    
Predicted Functional Partners:
ADU35173.1
XapX domain protein; KEGG: vap:Vapar_5471 protein of unknown function DUF1427; TIGRFAM: XapX domain protein; PFAM: protein of unknown function DUF1427.
 
     0.560
ADU35172.1
PFAM: isochorismatase hydrolase; KEGG: vap:Vapar_5472 isochorismatase hydrolase.
       0.538
ADU35174.1
PFAM: Amidohydrolase 3; KEGG: vap:Vapar_5470 amidohydrolase 3.
 
     0.537
ADU35175.1
PFAM: DoxX family protein; KEGG: vap:Vapar_5469 DoxX family protein.
 
     0.536
ADU35525.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3933 transcriptional regulator, LysR family.
  
     0.507
ADU35176.1
PFAM: protein of unknown function DUF894 DitE; KEGG: vap:Vapar_5468 protein of unknown function DUF894 DitE.
       0.472
ADU34735.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_3491 LysR family transcriptional regulator.
  
     0.432
ADU34365.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpl:BURPS1106A_A2577 LysR family transcriptional regulator.
  
     0.423
ADU35047.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_0807 transcriptional regulator, LysR family.
  
     0.421
ADU39797.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_4963 transcriptional regulator, LysR family.
  
     0.405
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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