STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35181.1KEGG: vap:Vapar_0903 SAM-dependent methyltransferase. (406 aa)    
Predicted Functional Partners:
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.723
ADU35178.1
PFAM: protein of unknown function DUF484; KEGG: vap:Vapar_0900 protein of unknown function DUF484.
       0.720
ADU35179.1
PFAM: protein of unknown function DUF218; KEGG: vap:Vapar_0901 protein of unknown function DUF218.
       0.715
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.706
ADU35182.1
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: vap:Vapar_0904 cobalamin synthesis protein P47K.
       0.547
ADU35175.1
PFAM: DoxX family protein; KEGG: vap:Vapar_5469 DoxX family protein.
       0.536
ADU35173.1
XapX domain protein; KEGG: vap:Vapar_5471 protein of unknown function DUF1427; TIGRFAM: XapX domain protein; PFAM: protein of unknown function DUF1427.
       0.531
ADU35174.1
PFAM: Amidohydrolase 3; KEGG: vap:Vapar_5470 amidohydrolase 3.
       0.531
ADU35176.1
PFAM: protein of unknown function DUF894 DitE; KEGG: vap:Vapar_5468 protein of unknown function DUF894 DitE.
       0.531
ADU35172.1
PFAM: isochorismatase hydrolase; KEGG: vap:Vapar_5472 isochorismatase hydrolase.
       0.480
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.