STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35453.1KEGG: vap:Vapar_1151 protein of unknown function DUF1568. (231 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.718
ADU35454.1
KEGG: vap:Vapar_1152 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
 
     0.713
ADU35449.1
TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: vap:Vapar_1147 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily.
       0.709
ADU35452.1
KEGG: vap:Vapar_1150 hypothetical protein.
       0.683
ADU35451.1
PFAM: protein of unknown function DUF1415; KEGG: vap:Vapar_1149 protein of unknown function DUF1415.
       0.682
ADU35442.1
KEGG: vap:Vapar_1140 type IV pilus assembly protein PilM; manually curated; TIGRFAM: type IV pilus assembly protein PilM.
 
     0.628
ADU35450.1
PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_1148 major facilitator superfamily MFS_1.
       0.621
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.599
ADU35444.1
KEGG: vap:Vapar_1142 pilus assembly protein PilO.
 
     0.590
ADU35445.1
PFAM: Pilus assembly protein PilP; KEGG: vap:Vapar_1143 pilus assembly protein PilP.
       0.534
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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