STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU35713.1Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: vap:Vapar_1362 histidine kinase internal region. (370 aa)    
Predicted Functional Partners:
ADU35714.1
KEGG: vap:Vapar_1363 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver.
 
 0.997
ADU38328.1
KEGG: vap:Vapar_3613 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver.
 
 
 0.873
ADU35715.1
PFAM: protein of unknown function UPF0118; KEGG: vap:Vapar_1364 protein of unknown function UPF0118.
       0.784
ADU38342.1
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: vap:Vapar_3622 response regulator receiver protein.
 
 
 0.697
argH
KEGG: vap:Vapar_1361 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
       0.591
ADU39380.1
KEGG: vap:Vapar_4623 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
  
   
 0.515
ADU39379.1
KEGG: vap:Vapar_4622 CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein.
  
   
 0.500
ADU35711.1
PFAM: Rhomboid family protein; KEGG: vap:Vapar_1360 rhomboid family protein.
       0.480
ADU35445.1
PFAM: Pilus assembly protein PilP; KEGG: vap:Vapar_1143 pilus assembly protein PilP.
  
     0.410
ADU39381.1
PFAM: CheW domain protein; KEGG: vap:Vapar_4624 CheW protein.
  
     0.401
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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