STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36110.1TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: vap:Vapar_1729 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; Belongs to the DapA family. (303 aa)    
Predicted Functional Partners:
ADU36113.1
TIGRFAM: glucarate dehydratase; KEGG: vap:Vapar_1731 glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein.
 
  
 0.980
ADU35339.1
PFAM: dihydrodipicolinate synthetase; KEGG: vap:Vapar_1052 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
  0.948
ADU36102.1
TIGRFAM: galactarate dehydratase; KEGG: vap:Vapar_1721 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
  
 0.939
ADU36115.1
PFAM: Aldehyde Dehydrogenase; KEGG: vap:Vapar_1732 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.737
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.599
ADU35024.1
KEGG: vap:Vapar_0783 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
  
 0.598
ADU36111.1
KEGG: vap:Vapar_1730 hypothetical protein.
       0.596
ADU36114.1
PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: vap:Vapar_0705 SMP-30/gluconolaconase/LRE domain protein.
 
     0.591
ADU36112.1
KEGG: aav:Aave_3624 hypothetical protein.
       0.571
ADU36107.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_1726 NAD-dependent epimerase/dehydratase.
 
   
 0.569
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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