STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36112.1KEGG: aav:Aave_3624 hypothetical protein. (328 aa)    
Predicted Functional Partners:
ADU34568.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_0317 protein of unknown function DUF112 transmembrane.
 
  
 0.809
ADU35562.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_1251 protein of unknown function DUF112 transmembrane.
 
  
 0.809
ADU36665.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_6378 protein of unknown function DUF112 transmembrane.
 
  
 0.809
ADU37725.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5653 hypothetical protein.
 
  
 0.807
ADU37638.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_3008 protein of unknown function DUF112 transmembrane.
 
  
 0.784
ADU39360.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_4491 protein of unknown function DUF112 transmembrane.
 
  
 0.754
ADU36111.1
KEGG: vap:Vapar_1730 hypothetical protein.
       0.752
ADU36113.1
TIGRFAM: glucarate dehydratase; KEGG: vap:Vapar_1731 glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein.
       0.742
ADU36114.1
PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: vap:Vapar_0705 SMP-30/gluconolaconase/LRE domain protein.
       0.593
ADU36110.1
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: vap:Vapar_1729 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; Belongs to the DapA family.
       0.571
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.