STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36177.1PFAM: Transglycosylase-associated protein; KEGG: vap:Vapar_1793 transglycosylase-associated protein. (82 aa)    
Predicted Functional Partners:
ADU36176.1
KEGG: vap:Vapar_1792 hypothetical protein.
       0.622
ADU38389.1
Methyltransferase; Manually curated; TIGRFAM: methyltransferase; KEGG: vap:Vapar_3659 methyltransferase; PFAM: Protein of unknown function DUF2260.
   
    0.618
ADU36178.1
PFAM: PEBP family protein; KEGG: vap:Vapar_1794 PEBP family protein.
       0.544
ADU37923.1
PFAM: protein of unknown function DUF883 ElaB; KEGG: vap:Vapar_2153 protein of unknown function DUF883 ElaB.
  
  
 0.501
ADU34756.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.461
ADU37209.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.461
ADU39781.1
Peptidoglycan-binding lysin domain; KEGG: vap:Vapar_4948 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM.
 
    0.429
ADU38942.1
PFAM: Ferritin Dps family protein; KEGG: vap:Vapar_4114 ferritin Dps family protein.
 
    0.427
ADU37002.1
KEGG: vap:Vapar_2714 hypothetical protein.
       0.418
ADU36154.1
PFAM: CsbD family protein; KEGG: vap:Vapar_1771 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.415
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.