STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36180.1PFAM: integrase family protein; KEGG: aav:Aave_1734 phage integrase family protein; Belongs to the 'phage' integrase family. (327 aa)    
Predicted Functional Partners:
ADU36179.1
KEGG: xce:Xcel_0567 hypothetical protein.
 
  
 0.833
ADU36181.1
KEGG: bbr:BB1662 hypothetical protein.
       0.642
ADU39217.1
PFAM: phosphoribosyltransferase; KEGG: vap:Vapar_4395 ComF family protein.
  
    0.549
ADU35988.1
KEGG: vap:Vapar_1616 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
  
    0.500
ADU36182.1
KEGG: cre:CHLREDRAFT_176488 hypothetical protein.
       0.477
ADU36183.1
KEGG: nmu:Nmul_A1454 hypothetical protein.
       0.477
ADU36247.1
PFAM: protein of unknown function DUF159; KEGG: dar:Daro_2224 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
  
 0.410
ADU36963.1
PFAM: protein of unknown function DUF159; KEGG: dar:Daro_2224 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
  
 0.410
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.408
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.