STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36310.1PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_0027 AMP-dependent synthetase and ligase. (606 aa)    
Predicted Functional Partners:
ADU36312.1
PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_4065 extracellular ligand-binding receptor.
 
    0.929
ADU36311.1
KEGG: rfr:Rfer_4066 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.887
ADU36315.1
KEGG: dac:Daci_0032 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.856
ADU36313.1
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4064 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.816
ADU36314.1
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4063 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.793
ADU39869.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_5012 putative phenylacetate-CoA ligase.
 
    0.709
ADU35629.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_1316 AMP-dependent synthetase and ligase.
 
 
0.706
ADU39708.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_4884 AMP-dependent synthetase and ligase.
 
 
0.696
ADU38476.1
PFAM: AMP-dependent synthetase and ligase; KEGG: rpi:Rpic_0109 AMP-dependent synthetase and ligase.
 
 
0.693
ADU38578.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vap:Vapar_3832 AMP-dependent synthetase and ligase.
 
 
0.689
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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