STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36353.1KEGG: ajs:Ajs_3974 hypothetical protein. (322 aa)    
Predicted Functional Partners:
ADU34568.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_0317 protein of unknown function DUF112 transmembrane.
 
  
 0.822
ADU35562.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_1251 protein of unknown function DUF112 transmembrane.
 
  
 0.822
ADU36665.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_6378 protein of unknown function DUF112 transmembrane.
 
  
 0.822
ADU37725.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5653 hypothetical protein.
 
  
 0.822
ADU37638.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_3008 protein of unknown function DUF112 transmembrane.
 
  
 0.809
ADU39360.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vap:Vapar_4491 protein of unknown function DUF112 transmembrane.
 
  
 0.809
ADU36354.1
KEGG: vap:Vapar_3457 hypothetical protein.
 
    
0.798
ADU36352.1
PFAM: protein of unknown function DUF72; KEGG: pna:Pnap_0190 hypothetical protein.
       0.705
ADU36350.1
KEGG: cti:RALTA_B0680 putative alcool deshydrogenase; TIGRFAM: phosphonate metabolism-associated iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase.
       0.634
ADU36351.1
KEGG: cti:RALTA_B1648 aldehyde dehydrogenase; TIGRFAM: phosphonoacetaldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.627
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.