STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36382.1SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: vap:Vapar_3437 cupin 4 family protein. (380 aa)    
Predicted Functional Partners:
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.832
ADU36383.1
KEGG: vap:Vapar_3436 hypothetical protein.
       0.803
ADU36381.1
KEGG: vap:Vapar_3438 fkbp-type peptidyl-prolyl cis-trans isomerase.
       0.633
ADU38246.1
PFAM: protein of unknown function DUF615; KEGG: vap:Vapar_3553 protein of unknown function DUF615; Belongs to the UPF0307 family.
  
     0.572
ADU36384.1
KEGG: vap:Vapar_3435 hypothetical protein.
       0.532
ADU34482.1
PFAM: Zinc finger, CHCC-type; KEGG: vap:Vapar_0255 hypothetical protein.
  
     0.507
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.480
ADU35784.1
TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: vap:Vapar_1429 succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.430
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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