STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36388.1PFAM: thiopurine S-methyltransferase; KEGG: vap:Vapar_3431 methyltransferase type 11. (189 aa)    
Predicted Functional Partners:
ADU36390.1
PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_3429 major facilitator superfamily MFS_1.
       0.749
ADU36389.1
KEGG: vap:Vapar_3430 hypothetical protein.
       0.737
dapA-2
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
   
   0.639
ADU37897.1
PFAM: protein of unknown function DUF465; KEGG: vap:Vapar_2177 protein of unknown function DUF465.
  
     0.573
parE
DNA topoisomerase (ATP-hydrolyzing); Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
       0.549
ADU39470.1
KEGG: vap:Vapar_4685 phasin family protein; TIGRFAM: phasin family protein; PFAM: Phasin.
  
     0.541
ADU35837.1
KEGG: vap:Vapar_1471 hypothetical protein.
  
     0.491
ADU36392.1
PFAM: Lytic transglycosylase catalytic; KEGG: vap:Vapar_3427 lytic transglycosylase catalytic.
       0.438
ADU36030.1
Ribonuclease BN; KEGG: vap:Vapar_1670 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN.
  
 
   0.423
ADU39215.1
PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: vap:Vapar_4393 putative transmembrane protein.
  
     0.417
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.