STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36398.1PFAM: isochorismatase hydrolase; KEGG: vap:Vapar_3421 isochorismatase hydrolase. (178 aa)    
Predicted Functional Partners:
ADU36397.1
KEGG: phe:Phep_2927 hypothetical protein.
       0.768
ADU34765.1
PFAM: isochorismatase hydrolase; KEGG: vap:Vapar_0488 isochorismatase hydrolase.
  
     0.736
ADU36396.1
KEGG: vap:Vapar_3422 hypothetical protein.
       0.635
ADU36792.1
PFAM: isochorismatase hydrolase; KEGG: vap:Vapar_5384 isochorismatase hydrolase.
  
     0.569
ADU35044.1
PFAM: isochorismatase hydrolase; KEGG: vap:Vapar_0804 isochorismatase hydrolase.
  
     0.492
ADU36395.1
KEGG: vap:Vapar_3423 hypothetical protein.
  
    0.421
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.