STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36405.1PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: vap:Vapar_3415 xylose isomerase domain protein TIM barrel. (247 aa)    
Predicted Functional Partners:
ADU36406.1
PFAM: PfkB domain protein; KEGG: vap:Vapar_3414 PfkB domain protein.
  
 0.981
ADU36407.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_3413 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
    0.875
ADU36408.1
KEGG: vap:Vapar_3412 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
  
 0.823
ADU36404.1
KEGG: vap:Vapar_3416 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.768
ADU36403.1
KEGG: vap:Vapar_3417 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
     0.745
ADU38851.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: vap:Vapar_1927 oxidoreductase domain protein.
 
  
 0.579
ADU36402.1
KEGG: vap:Vapar_3418 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
  
    0.545
ADU36699.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: vap:Vapar_2321 oxidoreductase domain protein.
  
  
 0.503
ADU37244.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pzu:PHZ_c2664 glucose-fructose oxidoreductase.
  
  
 0.503
ADU38134.1
PFAM: oxidoreductase domain protein; KEGG: vap:Vapar_1858 oxidoreductase domain protein.
  
  
 0.503
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.