STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36406.1PFAM: PfkB domain protein; KEGG: vap:Vapar_3414 PfkB domain protein. (317 aa)    
Predicted Functional Partners:
ADU36407.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_3413 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
 
 0.989
ADU36405.1
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: vap:Vapar_3415 xylose isomerase domain protein TIM barrel.
  
 0.981
ADU36157.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_1774 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
 
 0.938
ADU36408.1
KEGG: vap:Vapar_3412 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
  
 0.893
ADU36404.1
KEGG: vap:Vapar_3416 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.759
ADU36403.1
KEGG: vap:Vapar_3417 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
  
    0.674
ADU38434.1
PFAM: KDPG and KHG aldolase; KEGG: vap:Vapar_3691 KDPG and KHG aldolase.
 
  
 0.674
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.663
ADU38451.1
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: vap:Vapar_3707 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
  
 0.623
hisA
TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: vap:Vapar_1170 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein.
  
  
 0.582
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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