STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36496.1KEGG: xca:xccb100_2325 putative filamentous hemagglutinin-related protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin. (3696 aa)    
Predicted Functional Partners:
ADU35796.1
PFAM: YadA domain-containing protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: vap:Vapar_5560 YadA domain protein.
 
  
 0.813
ADU34932.1
KEGG: mar:MAE_61060 hyalin repeat-containing protein.
 
  
 0.801
ADU38586.1
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xca:xccb100_0753 putative methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.750
ADU37601.1
KEGG: vap:Vapar_2516 hypothetical protein.
  
     0.731
ADU35113.1
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: svi:Svir_11630 metalloendopeptidase-like membrane protein.
 
  
 0.720
ADU39591.1
KEGG: vap:Vapar_4778 hypothetical protein.
  
   
 0.700
ADU35795.1
KEGG: bvi:Bcep1808_3481 hypothetical protein.
 
  
 0.694
ADU39251.1
KEGG: vap:Vapar_4461 hypothetical protein.
  
     0.689
ADU34293.1
KEGG: bur:Bcep18194_B0391 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.
 
     0.684
ADU38020.1
Hypothetical protein; KEGG: msv:Mesil_0723 GCN5-related N-acetyltransferase.
 
     0.682
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.