STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36497.1KEGG: vap:Vapar_3330 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR. (267 aa)    
Predicted Functional Partners:
ADU39507.1
KEGG: vap:Vapar_4716 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
     0.771
ADU37950.1
KEGG: vap:Vapar_2125 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
     0.770
ADU37984.1
KEGG: dac:Daci_0043 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
     0.769
ADU34407.1
KEGG: vap:Vapar_0160 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
     0.761
ADU38081.1
KEGG: vap:Vapar_6258 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
     0.758
ADU34525.1
KEGG: vap:Vapar_0293 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
     0.746
ADU34918.1
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: rfr:Rfer_0869 hypothetical protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
    0.738
ADU36498.1
PFAM: Shikimate dehydrogenase substrate binding domain protein; KEGG: vap:Vapar_3329 shikimate dehydrogenase substrate binding domain protein.
 
     0.570
ADU36501.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: vap:Vapar_3323 carboxymuconolactone decarboxylase.
 
   
 0.563
ADU36500.1
KEGG: vap:Vapar_3324 3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase.
 
   
 0.541
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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