STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36503.1PFAM: alpha/beta hydrolase fold; KEGG: vap:Vapar_3321 alpha/beta hydrolase fold protein. (255 aa)    
Predicted Functional Partners:
ADU36501.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: vap:Vapar_3323 carboxymuconolactone decarboxylase.
 
 0.998
ADU35148.1
PFAM: Muconolactone delta-isomerase; KEGG: azc:AZC_2339 methylmuconolactone isomerase.
 
 
 0.942
ADU38423.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: vap:Vapar_3680 carboxymuconolactone decarboxylase.
 
 
 0.926
ADU39257.1
PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase.
  
  
 0.922
ADU39300.1
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: vap:Vapar_4435 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.915
ADU35081.1
PFAM: Carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; KEGG: yen:YE3027 exported protein.
  
 
 0.907
ADU39299.1
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: vap:Vapar_4434 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
 
 0.906
ADU38264.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: cai:Caci_7488 carboxymuconolactone decarboxylase.
   
 
  0.900
ADU36500.1
KEGG: vap:Vapar_3324 3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase.
 
  
 0.856
ADU39327.1
KEGG: vap:Vapar_4464 protocatechuate 3,4-dioxygenase, beta subunit; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase.
 
   
 0.714
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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