STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36996.1KEGG: bcm:Bcenmc03_5134 HipA domain-containing protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. (443 aa)    
Predicted Functional Partners:
ADU36995.1
KEGG: bam:Bamb_4541 XRE family transcriptional regulator.
  
 
 0.877
ADU37414.1
KEGG: vap:Vapar_2955 HipA N-terminal domain protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
     0.737
ADU37165.1
KEGG: vap:Vapar_5912 HipA domain protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
     0.733
ADU40105.1
Helix-turn-helix domain protein; KEGG: aav:Aave_4519 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
 
 0.593
ADU36559.1
PFAM: HipA domain protein; KEGG: vap:Vapar_3279 HipA domain protein.
 
   
 0.536
ADU39966.1
HipA N-terminal domain protein; KEGG: rme:Rmet_4901 putative regulator containing a HipA-like domain; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
     0.518
ADU39412.1
Helix-turn-helix domain protein; KEGG: vap:Vapar_3229 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
   
 
 0.501
ADU36997.1
PFAM: thioesterase superfamily protein; KEGG: pat:Patl_2706 hypothetical protein.
       0.468
ADU36994.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_6038 transcriptional regulator, LysR family.
       0.441
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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