STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU36997.1PFAM: thioesterase superfamily protein; KEGG: pat:Patl_2706 hypothetical protein. (137 aa)    
Predicted Functional Partners:
ADU40096.1
PFAM: fatty acid desaturase; KEGG: vap:Vapar_5215 fatty acid desaturase.
  
   
 0.585
ADU38788.1
PFAM: beta-lactamase; KEGG: vap:Vapar_3990 beta-lactamase.
  
     0.538
ADU38558.1
KEGG: vei:Veis_4669 hypothetical protein.
  
    0.510
ADU34485.1
PFAM: O-antigen polymerase; KEGG: vap:Vapar_0257 O-antigen polymerase.
  
     0.508
ADU35183.1
PFAM: protein of unknown function DUF945; KEGG: vap:Vapar_0905 protein of unknown function DUF945.
  
     0.499
ADU37334.1
PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_2900 major facilitator superfamily MFS_1.
  
     0.495
ADU39251.1
KEGG: vap:Vapar_4461 hypothetical protein.
  
     0.488
ADU39976.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vap:Vapar_5103 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.478
ADU34811.1
PFAM: Type IV / VI secretion system, DotU; KEGG: vap:Vapar_0554 hypothetical protein.
  
     0.473
ADU39591.1
KEGG: vap:Vapar_4778 hypothetical protein.
 
     0.472
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.