STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37017.1Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_2726 transcriptional regulator CysB-like protein. (313 aa)    
Predicted Functional Partners:
ADU37016.1
PFAM: aminotransferase class I and II; KEGG: vap:Vapar_2725 putative aminotransferase.
       0.864
ADU37020.1
PFAM: permease YjgP/YjgQ family protein; KEGG: vap:Vapar_2729 permease YjgP/YjgQ family protein.
 
     0.802
ADU37018.1
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: vap:Vapar_2727 cobalamin (vitamin B12) biosynthesis CbiX protein.
       0.754
ADU37019.1
PFAM: permease YjgP/YjgQ family protein; KEGG: vap:Vapar_2728 permease YjgP/YjgQ family protein.
       0.693
ADU37015.1
KEGG: rru:Rru_A0706 RarD protein.
       0.692
ADU35640.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1893 LysR family transcriptional regulator.
  
     0.682
ADU38477.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfl:PFL_3837 LysR family transcriptional regulator.
  
     0.679
ADU36040.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_1682 transcriptional regulator, LysR family.
  
     0.676
ADU38519.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3612 LysR family transcriptional regulator.
  
     0.672
ADU37755.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_5027 transcriptional regulator, LysR family.
  
     0.656
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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