STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37316.1Transcriptional regulator, LacI family; Manually curated; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_4573 LacI family transcription regulator; SMART: regulatory protein LacI. (346 aa)    
Predicted Functional Partners:
ADU35454.1
KEGG: vap:Vapar_1152 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.847
ADU37315.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pol:Bpro_4572 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
   
 0.779
ADU39729.1
KEGG: vap:Vapar_4897 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
 
 
 
 0.571
ADU37317.1
KEGG: scl:sce6063 hypothetical protein.
     
 0.500
ADU34617.1
KEGG: vap:Vapar_0376 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
   
 0.498
ADU34576.1
Xylulokinase; KEGG: vap:Vapar_0340 xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; Belongs to the FGGY kinase family.
 
 
 
 0.485
ADU38686.1
Amino acid adenylation domain protein; KEGG: bsu:BSU31960 siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin synthetase; TIGRFAM: amino acid adenylation domain protein; thioester reductase domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Male sterility domain.
    
 
 0.467
ADU36406.1
PFAM: PfkB domain protein; KEGG: vap:Vapar_3414 PfkB domain protein.
 
  
 0.465
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
   0.461
ADU35416.1
PFAM: PfkB domain protein; KEGG: vap:Vapar_1115 PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.456
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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