STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37384.1Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (179 aa)    
Predicted Functional Partners:
msrB
TIGRFAM: methionine-R-sulfoxide reductase; KEGG: vap:Vapar_2936 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.900
ADU37385.1
PFAM: BolA family protein; KEGG: vap:Vapar_2938 BolA family protein; Belongs to the BolA/IbaG family.
  
    0.882
selO
Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.833
ADU37386.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: vap:Vapar_2939 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.685
ADU37381.1
KEGG: vap:Vapar_2934 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
       0.592
ADU38787.1
KEGG: vap:Vapar_3987 membrane protein-like protein.
  
    0.545
ADU38959.1
PFAM: import inner membrane translocase subunit Tim44; KEGG: vap:Vapar_4128 import inner membrane translocase subunit Tim44.
  
    0.518
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.443
ADU39162.1
KEGG: vap:Vapar_4349 4Fe-4S ferredoxin, iron-sulfur binding.
  
     0.436
ADU37380.1
PFAM: Carboxylesterase type B; KEGG: vap:Vapar_2933 carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family.
       0.408
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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