STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37392.1KEGG: mbr:MONBRDRAFT_22661 hypothetical protein. (142 aa)    
Predicted Functional Partners:
ADU37391.1
KEGG: xcv:XCV3646 hypothetical protein.
       0.773
ADU37393.1
TIGRFAM: cellulose synthase operon protein YhjQ; KEGG: bpy:Bphyt_5835 cellulose synthase operon protein YhjQ.
       0.773
ADU37394.1
KEGG: xac:XAC3518 celullose synthase; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ.
       0.773
ADU37395.1
Cellulose synthase BcsB; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
       0.773
ADU37396.1
Cellulase; KEGG: xac:XAC3516 endo-1,4-D-glucanase; PFAM: glycoside hydrolase family 8; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
       0.737
ADU37397.1
PFAM: cellulose synthase operon C domain protein; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: xac:XAC3515 cellulose synthase subunit C.
       0.737
ADU37390.1
Diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein; TIGRFAM: diguanylate cyclase; KEGG: dia:Dtpsy_0071 diguanylate cyclase with GAF sensor; PFAM: GGDEF domain containing protein; GAF domain protein.
       0.407
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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