STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU37444.1PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sme:SMc00431 hypothetical protein. (134 aa)    
Predicted Functional Partners:
ADU38627.1
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ara:Arad_1237 hypothetical protein.
  
     0.772
ADU34349.1
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sme:SMc04177 hypothetical protein.
  
     0.765
ADU34622.1
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: vap:Vapar_0381 glutathione-dependent formaldehyde-activating GFA.
  
     0.758
ADU37443.1
KEGG: vap:Vapar_2654 cytosine deaminase; PFAM: Amidohydrolase 3.
       0.598
ADU37326.1
KEGG: bpd:BURPS668_A1241 hypothetical protein.
  
     0.516
ADU37441.1
KEGG: vap:Vapar_4333 hypothetical protein.
       0.421
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
       0.421
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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